MR Spectroscopy (MRS): Imaging Tissue Chemistry

Coronal T1 brain MRI through the pons (MNI ICBM152 template) labelled: grey matter, pons, corpus callosum, lateral ventricle. Handwritten note: CSF: dark on T1.
MRI: MNI ICBM152 2009b template. Copyright (C) 1993-2004 Louis Collins, McConnell Brain Imaging Centre, Montreal Neurological Institute, McGill University. Labels added.

MR Spectroscopy (MRS): Imaging Tissue Chemistry

Instead of a picture, MRS produces a chemical fingerprint: the relative amounts of key metabolites in a chosen volume of tissue.

Updated September 2026 · 1 source listed

On this pageHow it worksThe main brain metabolitesUsesSources

How it works

Rather than forming an image, MRS reads the subtle frequency differences (chemical shift) between protons in different molecules, producing a spectrum of peaks. The height of each peak reflects how much of that metabolite is present. It is most established in the brain.

The main brain metabolites

PeakMeaning
NAA (N-acetylaspartate)Neuronal marker; falls with neuronal loss/injury
Choline (Cho)Membrane turnover; rises in tumour and active disease
Creatine (Cr)Relatively stable, so used as an internal reference
LactateAnaerobic metabolism: necrosis, high-grade tumour, ischaemia
LipidsNecrosis
The classic tumour pattern is a raised choline and reduced NAA (high Cho/NAA ratio), reflecting proliferation replacing normal neurons.

Uses

  • Brain tumours: supporting grading and distinguishing tumour from non-neoplastic lesions.
  • Treatment response: helping separate radiation necrosis from tumour recurrence.
  • Metabolic & neonatal disease: e.g. lactate in mitochondrial disorders and hypoxic-ischaemic injury.

MRS is interpreted alongside conventional and perfusion MRI, not in isolation, and is technically demanding (voxel placement, field homogeneity).

Sources

  1. Horská A, Barker PB. Imaging of brain tumors: MR spectroscopy and metabolic imaging. Neuroimaging Clin N Am 2010;20:293–310.

Educational summary for clinicians; interpretation is specialist and context-dependent. Not medical advice.

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